X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 0.1 M HEPES PH 7.5, 0.2 M MAGNESIUM NITRATE, 8-16% (W/V) PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 90.89 α = 90
b = 90.89 β = 90
c = 92.83 γ = 120
Symmetry
Space Group P 32 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING 2009-05-10
Diffraction Radiation
Monochromator Protocol
SI (111) DOUBLE CRYSTAL MONOCHROMATOR SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 -- Diamond I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.75 60.04 99.9 0.07 -- -- 5.35 -- 11882 -- 0.0 64.18
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.75 2.9 100.0 0.47 -- 1.58 5.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.75 39.98 -- 1.5 -- 11860 622 99.9 -- 0.194 0.191 0.258 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7512 3.028 -- 152 2756 0.2426 0.3326 -- 100.0
X Ray Diffraction 3.028 3.4659 -- 151 2769 0.2044 0.3103 -- 100.0
X Ray Diffraction 3.4659 4.3659 -- 153 2808 0.1628 0.233 -- 100.0
X Ray Diffraction 4.3659 39.9858 -- 166 2905 0.1743 0.2259 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -1.5253
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -1.5253
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.0507
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.062
f_plane_restr 0.004
f_bond_d 0.007
f_dihedral_angle_d 17.75
f_angle_d 0.982
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2247
Nucleic Acid Atoms 0
Heterogen Atoms 41
Solvent Atoms 69

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
MOSFLM data reduction
SCALA data scaling
PHASER phasing