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X-RAY DIFFRACTION
Materials and Methods page
2WPZ
  •   Crystallization Hide
    Crystallization Experiments
    Details 30% PEG 4000, 200 MM NA-ACETATE, 0.1 M TRIS, PH 8.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 25.38 α = 83.98
    b = 25.44 β = 84.86
    c = 33.7 γ = 78.55
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength 1.009
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.25
    Resolution(Low) 40
    Number Reflections(Observed) 20616
    Percent Possible(Observed) 91.1
    R Merge I(Observed) 0.04
    B(Isotropic) From Wilson Plot 17.3
    Redundancy 2.0
     
    High Resolution Shell Details
    Resolution(High) 1.25
    Resolution(Low) 1.33
    Percent Possible(All) 87.4
    R Merge I(Observed) 0.47
    Mean I Over Sigma(Observed) 1.85
    Redundancy 1.98
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.25
    Resolution(Low) 19.51
    Number of Reflections(Observed) 19310
    Number of Reflections(R-Free) 1453
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.18126
    R-Work 0.17807
    R-Free 0.22339
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 14.911
    Anisotropic B[1][1] 0.07
    Anisotropic B[1][2] 0.04
    Anisotropic B[1][3] 0.37
    Anisotropic B[2][2] -0.06
    Anisotropic B[2][3] -0.3
    Anisotropic B[3][3] -0.03
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.25
    Shell Resolution(Low) 1.282
    Number of Reflections(R-Free) 104
    Number of Reflections(R-Work) 1383
    R-Factor(R-Work) 0.316
    R-Factor(R-Free) 0.339
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 5.383
    r_sphericity_free 2.488
    r_rigid_bond_restr 2.776
    r_scangle_it 9.061
    r_scbond_it 6.184
    r_mcangle_it 5.175
    r_mcbond_other 1.828
    r_mcbond_it 4.414
    r_nbd_refined 0.22
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.005
    r_chiral_restr 0.09
    r_dihedral_angle_4_deg 14.903
    r_dihedral_angle_3_deg 15.699
    r_dihedral_angle_2_deg 36.243
    r_dihedral_angle_1_deg 4.215
    r_angle_other_deg 1.325
    r_angle_refined_deg 1.369
    r_bond_other_d 0.002
    r_bond_refined_d 0.012
    r_nbd_other 0.185
    r_nbtor_refined 0.178
    r_nbtor_other 0.077
    r_xyhbond_nbd_refined 0.194
    r_symmetry_vdw_refined 0.192
    r_symmetry_vdw_other 0.288
    r_symmetry_hbond_refined 0.153
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 814
    Nucleic Acid Atoms 0
    Heterogen Atoms 2
    Solvent Atoms 102
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building MOLREP