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X-RAY DIFFRACTION
Materials and Methods page
2WPR
  •   Crystallization Hide
    Crystallization Experiments
    Details 10% (W/V) PEG 4000, 10% (V/V) ISOPOPANOL, 3% (W/V) 1,5-DIAMINOPENTANE DIHYDROCHLORIDE, 100 MM NA-CITRATE PH 5.6
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 36.13 α = 90
    b = 62.53 β = 90
    c = 172.57 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength 0.9784
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.65
    Resolution(Low) 36
    Number Reflections(Observed) 10608
    Percent Possible(Observed) 87.8
    R Merge I(Observed) 0.13
    B(Isotropic) From Wilson Plot 41.0
    Redundancy 3.29
     
    High Resolution Shell Details
    Resolution(High) 2.65
    Resolution(Low) 2.81
    Percent Possible(All) 78.3
    R Merge I(Observed) 0.65
    Mean I Over Sigma(Observed) 2.53
    Redundancy 3.25
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.65
    Resolution(Low) 35.36
    Number of Reflections(Observed) 10114
    Number of Reflections(R-Free) 529
    Percent Reflections(Observed) 88.54
    R-Factor(Observed) 0.26989
    R-Work 0.26704
    R-Free 0.32729
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.188
    Anisotropic B[1][1] 0.89
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 3.88
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.76
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.65
    Shell Resolution(Low) 2.718
    Number of Reflections(R-Free) 34
    Number of Reflections(R-Work) 677
    R-Factor(R-Work) 0.34
    R-Factor(R-Free) 0.381
    Percent Reflections(Observed) 80.61
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 9.519
    r_scbond_it 6.103
    r_mcangle_it 3.751
    r_mcbond_other 0.0
    r_mcbond_it 2.046
    r_nbd_refined 0.253
    r_gen_planes_other 0.003
    r_gen_planes_refined 0.004
    r_chiral_restr 0.087
    r_dihedral_angle_4_deg 30.119
    r_dihedral_angle_3_deg 20.77
    r_dihedral_angle_2_deg 29.402
    r_dihedral_angle_1_deg 6.219
    r_angle_other_deg 4.196
    r_angle_refined_deg 1.551
    r_bond_other_d 0.0
    r_bond_refined_d 0.018
    r_nbd_other 0.205
    r_nbtor_refined 0.215
    r_nbtor_other 0.104
    r_xyhbond_nbd_refined 0.136
    r_symmetry_vdw_refined 0.179
    r_symmetry_vdw_other 0.225
    r_symmetry_hbond_refined 0.236
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2277
    Nucleic Acid Atoms 0
    Heterogen Atoms 4
    Solvent Atoms 19
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building MOLREP