POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2WIN
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 75 MM SODIUM/POTASSIUM TARTRATE, 8.0% PEG 3350, 50 MM BIS-TRIS PROPANE, PH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 228.63 α = 90
    b = 121.49 β = 91.64
    c = 280.78 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2008-03-02
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 0.97500
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.7
    Resolution(High) 3.9
    Resolution(Low) 40
    Number Reflections(Observed) 137476
    Percent Possible(Observed) 97.6
    R Merge I(Observed) 0.13
    B(Isotropic) From Wilson Plot 125.23
    Redundancy 3.5
     
    High Resolution Shell Details
    Resolution(High) 3.9
    Resolution(Low) 4.1
    Percent Possible(All) 92.0
    R Merge I(Observed) 0.69
    Mean I Over Sigma(Observed) 1.8
    Redundancy 3.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.9
    Resolution(Low) 39.675
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 137444
    Number of Reflections(R-Free) 2088
    Percent Reflections(Observed) 97.63
    R-Factor(Observed) 0.2533
    R-Work 0.2531
    R-Free 0.2679
     
    Temperature Factor Modeling
    Mean Isotropic B Value 158.8
    Anisotropic B[1][1] -8.266
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -4.9722
    Anisotropic B[2][2] -10.927
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 19.193
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9
    Shell Resolution(Low) 3.9907
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 8356
    R-Factor(R-Work) 0.3378
    R-Factor(R-Free) 0.3476
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9907
    Shell Resolution(Low) 4.0904
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 8440
    R-Factor(R-Work) 0.3232
    R-Factor(R-Free) 0.3337
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0904
    Shell Resolution(Low) 4.2008
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 8671
    R-Factor(R-Work) 0.3076
    R-Factor(R-Free) 0.2892
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2008
    Shell Resolution(Low) 4.3243
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 8738
    R-Factor(R-Work) 0.2912
    R-Factor(R-Free) 0.3127
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3243
    Shell Resolution(Low) 4.4637
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 8929
    R-Factor(R-Work) 0.2695
    R-Factor(R-Free) 0.277
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4637
    Shell Resolution(Low) 4.623
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 9034
    R-Factor(R-Work) 0.2581
    R-Factor(R-Free) 0.2536
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.623
    Shell Resolution(Low) 4.8078
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 9103
    R-Factor(R-Work) 0.2512
    R-Factor(R-Free) 0.2737
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8078
    Shell Resolution(Low) 5.0262
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 9239
    R-Factor(R-Work) 0.2446
    R-Factor(R-Free) 0.237
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0262
    Shell Resolution(Low) 5.2906
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 9202
    R-Factor(R-Work) 0.2418
    R-Factor(R-Free) 0.2746
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2906
    Shell Resolution(Low) 5.6212
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 9171
    R-Factor(R-Work) 0.2467
    R-Factor(R-Free) 0.2699
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6212
    Shell Resolution(Low) 6.0539
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 9238
    R-Factor(R-Work) 0.2621
    R-Factor(R-Free) 0.2824
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.0539
    Shell Resolution(Low) 6.6605
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 9262
    R-Factor(R-Work) 0.2602
    R-Factor(R-Free) 0.2981
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.6605
    Shell Resolution(Low) 7.6184
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 9261
    R-Factor(R-Work) 0.2469
    R-Factor(R-Free) 0.2799
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.6184
    Shell Resolution(Low) 9.576
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 9311
    R-Factor(R-Work) 0.2049
    R-Factor(R-Free) 0.2241
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 9.576
    Shell Resolution(Low) 39.6773
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 9401
    R-Factor(R-Work) 0.2161
    R-Factor(R-Free) 0.2183
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.034
    f_dihedral_angle_d 14.379
    f_angle_d 0.519
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 67266
    Nucleic Acid Atoms 0
    Heterogen Atoms 715
    Solvent Atoms 8
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE)
     
    Software
    refinement PHENIX version: (PHENIX.REFINE)
    model building PHASER