X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.5
Details pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 64.93 α = 90
b = 87.96 β = 90
c = 99.13 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE (RAXIS IV) RIGAKU OSMIC BLUE MIRRORS 2007-11-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.18 30 86.3 0.05 -- -- 3.0 -- 14988 -- 3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.18 2.9 58.3 0.27 -- 3.8 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.18 65.8 -- -- -- 12290 631 85.5 -- 0.237 0.233 0.304 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.18 2.24 -- 36 538 0.291 0.361 -- 51.9
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 57.7
Anisotropic B[1][1] -0.35
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 4.63
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -4.28
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 4.699
r_scbond_it 2.851
r_mcangle_it 2.04
r_mcbond_it 1.134
r_gen_planes_refined 0.009
r_chiral_restr 0.136
r_dihedral_angle_4_deg 21.356
r_dihedral_angle_3_deg 19.085
r_dihedral_angle_2_deg 34.659
r_dihedral_angle_1_deg 8.265
r_angle_refined_deg 2.096
r_bond_refined_d 0.02
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1629
Nucleic Acid Atoms 0
Heterogen Atoms 23
Solvent Atoms 31

Software

Computing
Computing Package Purpose
D*TREK Data Reduction (intensity integration)
D*TREK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.5.0066 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0066 refinement
AMORE model building