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X-RAY DIFFRACTION
Materials and Methods page
2WG5
  •   Crystallization Hide
    Crystallization Experiments
    Details 100 MM TRIS PH 9.0, 1 M NH4H2PO4, 25% ETHYLENE GLYCOL
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 103.39 α = 90
    b = 91.95 β = 119.93
    c = 103.22 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength 1.071
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.1
    Resolution(Low) 34.36
    Number Reflections(Observed) 97626
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.04
    Redundancy 4.28
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.22
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.69
    Mean I Over Sigma(Observed) 2.26
    Redundancy 4.23
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 34.36
    Number of Reflections(Observed) 92772
    Number of Reflections(R-Free) 4853
    Percent Reflections(Observed) 99.86
    R-Factor(Observed) 0.19901
    R-Work 0.19753
    R-Free 0.22742
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 41.365
    Anisotropic B[1][1] -0.36
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.17
    Anisotropic B[2][2] 0.74
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.55
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.154
    Number of Reflections(R-Free) 371
    Number of Reflections(R-Work) 6825
    R-Factor(R-Work) 0.273
    R-Factor(R-Free) 0.318
    Percent Reflections(Observed) 99.46
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 11.533
    r_scbond_it 8.322
    r_mcangle_it 6.375
    r_mcbond_other 0.0
    r_mcbond_it 4.308
    r_nbd_refined 0.205
    r_gen_planes_other 0.006
    r_gen_planes_refined 0.006
    r_chiral_restr 0.1
    r_dihedral_angle_4_deg 22.065
    r_dihedral_angle_3_deg 15.745
    r_dihedral_angle_2_deg 40.047
    r_dihedral_angle_1_deg 6.563
    r_angle_other_deg 4.229
    r_angle_refined_deg 1.628
    r_bond_other_d 0.0
    r_bond_refined_d 0.018
    r_nbd_other 0.233
    r_nbtor_refined 0.173
    r_nbtor_other 0.112
    r_xyhbond_nbd_refined 0.177
    r_xyhbond_nbd_other 0.028
    r_symmetry_vdw_refined 0.141
    r_symmetry_vdw_other 0.21
    r_symmetry_hbond_refined 0.132
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8029
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 428
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building MOLREP