X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.43 α = 90
b = 41.22 β = 104.26
c = 72.04 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID23-1 -- ESRF ID23-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.1 41 95.0 0.07 -- -- 3.3 -- 308902 -- 1.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.1 26.64 -- -- -- 88639 4651 95.2 -- 0.166 0.165 0.183 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.1 1.13 -- 216 4499 0.256 0.255 -- 65.37
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 12.47
Anisotropic B[1][1] 0.0
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.0
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.0
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 5.536
r_scbond_it 4.017
r_mcangle_it 2.621
r_mcbond_it 1.849
r_nbd_refined 0.276
r_gen_planes_refined 0.016
r_chiral_restr 0.165
r_dihedral_angle_4_deg 22.99
r_dihedral_angle_3_deg 14.024
r_dihedral_angle_2_deg 35.625
r_dihedral_angle_1_deg 7.071
r_angle_refined_deg 2.614
r_bond_refined_d 0.034
r_nbtor_refined 0.319
r_xyhbond_nbd_refined 0.229
r_metal_ion_refined 0.102
r_symmetry_vdw_refined 0.279
r_symmetry_hbond_refined 0.259
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2058
Nucleic Acid Atoms 0
Heterogen Atoms 18
Solvent Atoms 287

Software

Computing
Computing Package Purpose
REFMAC 5.2.0019 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.2.0019 refinement