X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 9
Details 20% PEG 6000, 0.1M BICINE PH 9.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 185.52 α = 90
b = 52.21 β = 118.19
c = 128.78 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC -- 2008-07-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- DIAMOND I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.35 40 94.3 0.05 -- -- 3.6 -- 43159 -- 1.0 46.43
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.35 2.41 95.5 0.32 -- 4.5 3.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.35 38.81 -- 0.0 -- 43084 2187 93.8 -- 0.275 0.274 0.283 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.35 2.49 -- 368 6538 0.3102 0.3434 -- 93.84
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 42.25
Anisotropic B[1][1] 0.30662
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 2.57021
Anisotropic B[2][2] -11.03
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 10.7234
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8412
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 424

Software

Computing
Computing Package Purpose
XIA2 WITH XDS Data Reduction (intensity integration)
XIA2 WITH SCALA Data Reduction (data scaling)
BUSTER-TNT, PHASER, SHARP, SOLOMON, DM Structure Solution
BUSTER-TNT 2.5.1 Structure Refinement
Software
Software Name Purpose
BUSTER-TNT version: 2.5.1 refinement
DM model building
SOLOMON model building
SHARP model building
PHASER model building
BUSTER-TNT model building