X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 84.23 α = 90
b = 106.21 β = 90
c = 122.64 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 17-ID -- APS 17-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.77 80 99.9 0.08 -- -- 4.94 -- 107085 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.77 1.83 99.9 0.54 -- 2.35 4.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.77 20.0 -- -- -- 101581 5319 99.8 -- 0.176 0.174 0.202 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.77 1.82 -- 367 7298 0.273 0.312 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 20.85
Anisotropic B[1][1] -0.23
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.54
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.31
RMS Deviations
Key Refinement Restraint Deviation
r_nbtor_other 0.081
r_scangle_it 2.171
r_dihedral_angle_4_deg 18.796
r_mcangle_it 0.75
r_symmetry_vdw_other 0.219
r_mcbond_it 0.683
r_scbond_it 1.467
r_nbd_refined 0.194
r_symmetry_vdw_refined 0.119
r_bond_other_d 0.001
r_gen_planes_refined 0.003
r_nbtor_refined 0.167
r_dihedral_angle_2_deg 33.748
r_dihedral_angle_3_deg 12.971
r_gen_planes_other 0.001
r_bond_refined_d 0.008
r_angle_other_deg 1.142
r_chiral_restr 0.112
r_dihedral_angle_1_deg 4.956
r_angle_refined_deg 1.118
r_nbd_other 0.181
r_xyhbond_nbd_refined 0.113
r_symmetry_hbond_refined 0.212
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6866
Nucleic Acid Atoms 0
Heterogen Atoms 28
Solvent Atoms 942

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0005
HKL-2000 data reduction
HKL-2000 data scaling
MOLREP phasing