X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 7.5
Details 8% PEG 3350, 0.1M HEPES PH 7.5, 0.05M AMMONIUM ACETATE

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 53.54 α = 90
b = 71.82 β = 90
c = 71.77 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD (SATURN92) RIGAKU CONFOCAL MIRRORS (VARIMAX) 2005-12-15
Diffraction Radiation
Monochromator Protocol
GRAPHITE SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.15 50.77 99.7 0.1 -- -- 3.33 -- 15575 -- 3.0 31.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.15 2.23 99.9 0.39 -- 2.1 3.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.15 42.93 -- -- -- 15562 779 99.693 -- 0.244 0.2416 0.3001 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 9.394 42.93 -- 11 212 0.234 0.123 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 39.933
Anisotropic B[1][1] -0.073
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.66
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.587
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 2.119
r_scbond_it 1.332
r_mcangle_it 1.089
r_mcbond_it 0.605
r_nbd_refined 0.214
r_gen_planes_other 0.001
r_gen_planes_refined 0.006
r_chiral_restr 0.077
r_dihedral_angle_4_deg 22.593
r_dihedral_angle_3_deg 16.179
r_dihedral_angle_2_deg 39.297
r_dihedral_angle_1_deg 6.473
r_angle_other_deg 0.914
r_angle_refined_deg 1.427
r_bond_other_d 0.004
r_bond_refined_d 0.012
r_nbd_other 0.181
r_nbtor_refined 0.179
r_nbtor_other 0.088
r_xyhbond_nbd_refined 0.19
r_symmetry_vdw_refined 0.118
r_symmetry_vdw_other 0.176
r_symmetry_hbond_refined 0.235
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2209
Nucleic Acid Atoms 0
Heterogen Atoms 37
Solvent Atoms 150

Software

Computing
Computing Package Purpose
CRYSTAL CLEAR Data Reduction (intensity integration)
CRYSTAL CLEAR Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.2.0005 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.2.0005 refinement
AMORE model building