X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.7
Details 0.1M HEPES/NAOH PH7.0 0.0475M AMMONIUM ACETATE 12% W/V PEG3350, pH 6.7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 53.26 α = 90
b = 71.76 β = 90
c = 71.35 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
RAXIS RIGAKU OSMIC CONFOCAL BLUE --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 HR -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 36.68 86.3 0.06 -- -- 2.9 -- 19117 -- 0.0 31.346
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.97 76.8 0.16 -- 2.3 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.89 36.68 -- 0.0 -- 19117 953 84.88 -- 0.2095 0.2068 0.2613 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.89 2.0 -- 144 2405 0.2252 0.3026 -- 84.88
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 39.66
Anisotropic B[1][1] 5.67196
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -13.4386
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 7.76662
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2339
Nucleic Acid Atoms 0
Heterogen Atoms 16
Solvent Atoms 169

Software

Computing
Computing Package Purpose
CRYSTAL CLEAR Data Reduction (intensity integration)
CRYSTAL CLEAR Data Reduction (data scaling)
AMORE Structure Solution
BUSTER-TNT 2.1.1 Structure Refinement
Software
Software Name Purpose
BUSTER-TNT version: 2.1.1 refinement
AMORE model building