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X-RAY DIFFRACTION
Materials and Methods page
2VTR
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.7
    Details 0.1M HEPES/NAOH PH7.0 0.0475M AMMONIUM ACETATE 12% W/V PEG3350, pH 6.7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.26 α = 90
    b = 71.76 β = 90
    c = 71.35 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector RAXIS
    Type RIGAKU
    Details OSMIC CONFOCAL BLUE
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RU200 HR
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.9
    Resolution(Low) 36.68
    Number Reflections(Observed) 19117
    Percent Possible(Observed) 86.3
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 31.346
    Redundancy 2.9
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Resolution(Low) 1.97
    Percent Possible(All) 76.8
    R Merge I(Observed) 0.16
    Mean I Over Sigma(Observed) 2.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.89
    Resolution(Low) 36.68
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 19117
    Number of Reflections(R-Free) 953
    Percent Reflections(Observed) 84.88
    R-Factor(Observed) 0.2095
    R-Work 0.2068
    R-Free 0.2613
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 39.66
    Anisotropic B[1][1] 5.67196
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -13.4386
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 7.76662
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.89
    Shell Resolution(Low) 2.0
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2405
    R-Factor(R-Work) 0.2252
    R-Factor(R-Free) 0.3026
    Percent Reflections(Observed) 84.88
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2339
    Nucleic Acid Atoms 0
    Heterogen Atoms 16
    Solvent Atoms 169
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) CRYSTAL CLEAR
    Data Reduction (data scaling) CRYSTAL CLEAR
    Structure Solution AMORE
    Structure Refinement BUSTER-TNT 2.1.1
     
    Software
    refinement BUSTER-TNT version: 2.1.1
    model building AMORE