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X-RAY DIFFRACTION
Materials and Methods page
2VTP
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.7
    Details 0.1M HEPES/NAOH PH7.0, 0.0475M AMMONIUM ACETATE, 12% W/V PEG3350, pH 6.7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.57 α = 90
    b = 71.77 β = 90
    c = 72.01 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU
    Details OSMIC CONFOCAL BLUE
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RU200HR
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.15
    Resolution(Low) 32.18
    Number Reflections(Observed) 15404
    Percent Possible(Observed) 98.4
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 32.396
    Redundancy 3.33
     
    High Resolution Shell Details
    Resolution(High) 2.15
    Resolution(Low) 2.23
    Percent Possible(All) 90.5
    R Merge I(Observed) 0.24
    Mean I Over Sigma(Observed) 2.6
    Redundancy 2.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.15
    Resolution(Low) 32.12
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 15402
    Number of Reflections(R-Free) 774
    Percent Reflections(Observed) 98.24
    R-Factor(Observed) 0.1892
    R-Work 0.1863
    R-Free 0.2473
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.36
    Anisotropic B[1][1] -0.2089
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.332877
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.541777
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.15
    Shell Resolution(Low) 2.28
    Number of Reflections(R-Free) 109
    Number of Reflections(R-Work) 2174
    R-Factor(R-Work) 0.1855
    R-Factor(R-Free) 0.225
    Percent Reflections(Observed) 98.24
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2263
    Nucleic Acid Atoms 0
    Heterogen Atoms 26
    Solvent Atoms 204
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) CRYSTAL CLEAR
    Data Reduction (data scaling) CRYSTAL CLEAR
    Structure Solution AMORE
    Structure Refinement BUSTER-TNT 2.1.1
     
    Software
    refinement BUSTER-TNT version: 2.1.1
    model building AMORE