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X-RAY DIFFRACTION
Materials and Methods page
2VTM
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.7
    Details 0.1M HEPES/NAOH PH7.0, 0.0475M AMMONIUM ACETATE, 12% W/V PEG3350, pH 6.7
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.52 α = 90
    b = 71.7 β = 90
    c = 72.41 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU
    Details OSMIC CONFOCAL PURPLE
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RU200HR
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.25
    Resolution(Low) 42.89
    Number Reflections(Observed) 13133
    Percent Possible(Observed) 95.5
    R Merge I(Observed) 0.1
    B(Isotropic) From Wilson Plot 37.66
    Redundancy 2.8
     
    High Resolution Shell Details
    Resolution(High) 2.25
    Resolution(Low) 2.33
    Percent Possible(All) 91.5
    R Merge I(Observed) 0.36
    Mean I Over Sigma(Observed) 1.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.25
    Resolution(Low) 42.89
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 13133
    Number of Reflections(R-Free) 651
    Percent Reflections(Observed) 95.32
    R-Factor(Observed) 0.2305
    R-Work 0.2276
    R-Free 0.2861
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 37.71
    Anisotropic B[1][1] 4.20301
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -5.89737
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.69436
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.25
    Shell Resolution(Low) 2.39
    Number of Reflections(R-Free) 104
    Number of Reflections(R-Work) 1896
    R-Factor(R-Work) 0.2414
    R-Factor(R-Free) 0.3523
    Percent Reflections(Observed) 95.32
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2335
    Nucleic Acid Atoms 0
    Heterogen Atoms 11
    Solvent Atoms 178
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) CRYSTAL CLEAR
    Data Reduction (data scaling) CRYSTAL CLEAR
    Structure Solution AMORE
    Structure Refinement BUSTER-TNT 2.1.1
     
    Software
    refinement BUSTER-TNT version: 2.1.1
    model building AMORE