X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Details pH 7.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.82 α = 90
b = 79.82 β = 90
c = 36.71 γ = 120
Symmetry
Space Group H 3

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH MICRO FOCUS --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 32.4 96.8 0.11 -- -- 4.5 -- 33133 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.9 84.4 0.54 -- 1.8 2.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 32.43 -- -- -- 7433 391 96.8 -- 0.175 0.172 0.239 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.85 -- 22 419 0.335 0.329 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.64
Anisotropic B[1][1] -0.28
Anisotropic B[1][2] -0.14
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.28
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.43
RMS Deviations
Key Refinement Restraint Deviation
r_bond_other_d 0.001
r_gen_planes_refined 0.007
r_gen_planes_other 0.001
r_dihedral_angle_2_deg 35.635
r_mcbond_it 0.936
r_scbond_it 2.061
r_symmetry_vdw_other 0.171
r_mcangle_it 1.085
r_angle_refined_deg 1.425
r_dihedral_angle_4_deg 9.904
r_dihedral_angle_1_deg 6.342
r_xyhbond_nbd_refined 0.276
r_nbd_other 0.181
r_angle_other_deg 0.959
r_nbd_refined 0.205
r_symmetry_vdw_refined 0.227
r_bond_refined_d 0.015
r_nbtor_other 0.09
r_nbtor_refined 0.189
r_symmetry_hbond_refined 0.414
r_scangle_it 2.545
r_dihedral_angle_3_deg 11.807
r_chiral_restr 0.089
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 785
Nucleic Acid Atoms 0
Heterogen Atoms 6
Solvent Atoms 97

Software

Software
Software Name Purpose
REFMAC refinement version: 5.3.0040
XDS data reduction
XSCALE data scaling
AMoRE phasing