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An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2VIZ
  •   Crystallization Hide
    Crystallization Experiments
    Details CRYSTALS GROWN BY VAPOUR DIFFUSION AT 20C USING STREAK SEEDING, WITH 10% PEG8000 AND 0.1M GLYCINE PH 3.2
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 48.74 α = 90
    b = 76.97 β = 90
    c = 104.22 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    B(Isotropic) From Wilson Plot 17.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 1.6
    Resolution(Low) 24.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 47565
    Number of Reflections(R-Free) 1905
    R-Work 0.198
    R-Free 0.227
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model RESTRAINED
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6
    Shell Resolution(Low) 1.61
    R-Factor(R-Work) 0.239
    R-Factor(R-Free) 0.303
    R-Free Error 0.044
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 2.92
    c_scbond_it 1.95
    c_mcangle_it 1.86
    c_mcbond_it 1.18
    c_bond_d 0.005
    c_angle_deg 0.9
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2921
    Nucleic Acid Atoms 0
    Heterogen Atoms 42
    Solvent Atoms 352
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement CNX 2000
     
    Software
    refinement CNX version: 2000