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X-RAY DIFFRACTION
Materials and Methods page
2UZO
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details VAPOR DIFFUSION HANGING DROP, ROOM TEMPERATURE, PEG3350, HEPES PH7.2, AMMONIUM ACETATE, pH 7.00
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.42 α = 90
    b = 72.26 β = 90
    c = 72.33 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Details MIRRORS
    Collection Date 2003-06-19
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 0.9393
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.2
    Resolution(Low) 20
    Number Reflections(Observed) 14029
    Percent Possible(Observed) 94.6
    R Merge I(Observed) 0.09
    Redundancy 4.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 12.0
    Number of Reflections(Observed) 11574
    Number of Reflections(R-Free) 598
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.215
    R-Work 0.212
    R-Free 0.291
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.27
    Anisotropic B[1][1] 0.1
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.05
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.05
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.36
    Number of Reflections(R-Free) 31
    Number of Reflections(R-Work) 820
    R-Factor(R-Work) 0.206
    R-Factor(R-Free) 0.284
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.734
    r_scbond_it 2.56
    r_mcangle_it 1.825
    r_mcbond_it 1.101
    r_nbd_refined 0.227
    r_gen_planes_refined 0.007
    r_chiral_restr 0.133
    r_dihedral_angle_4_deg 18.767
    r_dihedral_angle_3_deg 19.395
    r_dihedral_angle_2_deg 41.305
    r_dihedral_angle_1_deg 6.614
    r_angle_refined_deg 1.776
    r_bond_refined_d 0.018
    r_nbtor_refined 0.316
    r_xyhbond_nbd_refined 0.2
    r_symmetry_vdw_refined 0.227
    r_symmetry_hbond_refined 0.328
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2321
    Nucleic Acid Atoms 0
    Heterogen Atoms 23
    Solvent Atoms 71
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCAPEPACK
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building MOLREP