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An Information Portal to 105339 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2RT8
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer BRUKER
    Model DRX800
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 2.0 mM 5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'-1, 2.0 mM 5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'-2, 4.0 mM Mercury(II) perchlorate-3, 100 mM Sodium perchlorate-4, 100 % [U-100% 2H] D2O-5, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.10
    pH 6.0
    Pressure 1
    Pressure Units atm
    Temperature 283
    IDs solution ID:2 condition ID:1
    Sample Contents 2.0 mM 5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'-6, 2.0 mM 5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'-7, 4.0 mM Mercury(II) perchlorate-8, 100 mM Sodium perchlorate-9, 95 % H2O-10, 5 % [U-100% 2H] D2O-11, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 0.10
    pH 6.0
    Pressure 1
    Pressure Units atm
    Temperature 283
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method SIMMULATED ANNEALING
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria STRUCTURES WITH THE LOWEST ENERGY
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 17
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 2D DQF-COSY
     
  •   Software and Computing Hide
    NMR Software
    Authors Thomas L. James
    Classification structure solution
    Software Name MARDIGRAS
    Authors Goddard
    Classification peak picking
    Software Name SPARKY 3.1
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY 3.1
    Authors Goddard
    Classification processing
    Software Name SPARKY 3.1
    Classification refinement
    Software Name X-PLOR 3.851
    Classification structure solution
    Software Name X-PLOR 3.851