X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 273.0
Details VAPOR DIFFUSION, temperature 273K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 82.1 α = 90
b = 37.45 β = 101.48
c = 69.64 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 MIRROR 2007-04-15
Diffraction Radiation
Monochromator Protocol
SI-111 CHANNEL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.47 50 99.0 0.069 0.069 -- 7.7 35286 35286 -- -3.0 19.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.47 1.52 91.3 0.444 0.444 3.1 5.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.47 50.0 0.0 0.0 35272 35272 1769 99.03 0.15 0.15 0.148 0.179 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.47 1.51 -- 119 2298 0.211 0.288 -- 91.35
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 16.37
Anisotropic B[1][1] -0.71
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.58
Anisotropic B[2][2] -0.16
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.64
RMS Deviations
Key Refinement Restraint Deviation
r_nbtor_refined 0.184
r_nbd_refined 0.231
r_mcbond_it 1.537
r_bond_other_d 0.005
r_angle_refined_deg 1.715
r_gen_planes_other 0.003
r_scbond_it 2.896
r_mcangle_it 1.655
r_scangle_it 4.139
r_symmetry_vdw_refined 0.105
r_chiral_restr 0.118
r_dihedral_angle_2_deg 35.92
r_mcbond_other 0.356
r_gen_planes_refined 0.008
r_nbtor_other 0.088
r_nbd_other 0.2
r_dihedral_angle_4_deg 23.228
r_bond_refined_d 0.018
r_angle_other_deg 0.876
r_symmetry_vdw_other 0.241
r_xyhbond_nbd_refined 0.163
r_dihedral_angle_1_deg 5.866
r_dihedral_angle_3_deg 11.294
r_symmetry_hbond_refined 0.162
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1729
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 326

Software

Software
Software Name Purpose
HKL-3000 phasing
MLPHARE phasing
DM model building
SHELXD phasing
ARP/wARP model building
REFMAC refinement version: 5.2.0005
HKL-3000 data collection
HKL-2000 data reduction
HKL-2000 data scaling
DM phasing
SHELXE model building
RESOLVE phasing
O model building
Coot model building
CCP4 phasing