X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 291.0
Details 100mM Tris/HCl, 1mM DTT, 5% PEG 8000, 10% DMSO, 14mg/ml TGT, 20mM preQ1, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 89.9 α = 90
b = 64.93 β = 96.36
c = 71.18 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 113
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV mirrors 2004-09-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.46 20 98.6 -- 0.044 -- 3.2 64991 64991 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.46 8.0 -- -- 64991 64991 38064 92.3 0.1515 0.15 0.15 0.1984 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model ANISOTROPIC
RMS Deviations
Key Refinement Restraint Deviation
s_approx_iso_adps 0.084
s_similar_adp_cmpnt 0.051
s_rigid_bond_adp_cmpnt 0.004
s_anti_bump_dis_restr 0.034
s_non_zero_chiral_vol 0.067
s_zero_chiral_vol 0.072
s_from_restr_planes 0.0284
s_similar_dist 0.0
s_angle_d 0.031
s_bond_d 0.011
Coordinate Error
Parameter Value
Number Disordered Residues 31.0
Occupancy Sum Hydrogen 2827.0
Occupancy Sum Non Hydrogen 3365.0
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2739
Nucleic Acid Atoms 0
Heterogen Atoms 50
Solvent Atoms 258

Software

Computing
Computing Package Purpose
CrystalClear Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
CNS Structure Solution
shelxl Structure Refinement
Software
Software Name Purpose
shelxl refinement
CNS model building
CrystalClear data collection