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An Information Portal to 109093 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2MIS
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
    Field Strength 500.0
    Manufacturer Varian
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1 mM [U-100% 15N] RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 288
    IDs solution ID:1 condition ID:2
    Sample Contents 1 mM [U-100% 15N] RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:3
    Sample Contents 1 mM [U-100% 15N] RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+/Cd2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] RNA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 288
    IDs solution ID:2 condition ID:2
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] RNA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:3
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] RNA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 5 mM Mg2+/Cd2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 0.2-0.4 mM phosphorothioate RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 288
    IDs solution ID:3 condition ID:2
    Sample Contents 0.2-0.4 mM phosphorothioate RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:3
    Sample Contents 0.2-0.4 mM phosphorothioate RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+/Cd2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:1
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 288
    IDs solution ID:4 condition ID:2
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:3
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] RNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 5 mM Mg2+/Cd2+, 50 mM potassium chloride
    pH 6.5
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 500
    Conformers Submitted Total Number 21
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC NH2 only
    IDs experiment ID:3 solution ID:2 conditons ID:2
    Type 2D 1H-13C HSQC
    IDs experiment ID:4 solution ID:4 conditons ID:1
    Type 2D 1H-15N HSQC long-range
    IDs experiment ID:5 solution ID:3 conditons ID:3
    Type 1D 31P
     
  •   Software and Computing Hide
    NMR Software
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification data analysis
    Software Name NMRPipe
    Authors Johnson, One Moon Scientific
    Classification data analysis
    Software Name NMRView
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH