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An Information Portal to 105339 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2MI0
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
    Field Strength 500.0
    Manufacturer Varian
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1.3-2.2 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.3-2.2 mM [U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:2
    Sample Contents 1.3-2.2 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.3-2.2 mM [U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:10 condition ID:1
    Sample Contents 1.5 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.5 mM [U-13C; U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:10 condition ID:2
    Sample Contents 1.5 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.5 mM [U-13C; U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:11 condition ID:1
    Sample Contents 0.2-0.3 mM [U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 0.2-0.3 mM [U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 14.6-20.5 mg/mL Pf1 phage, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:11 condition ID:2
    Sample Contents 0.2-0.3 mM [U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 0.2-0.3 mM [U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 14.6-20.5 mg/mL Pf1 phage, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:2 condition ID:1
    Sample Contents 1.5 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.5 mM [U-13C; U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:2
    Sample Contents 1.5 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.5 mM [U-13C; U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:3 condition ID:1
    Sample Contents 1.4 mM [U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:2
    Sample Contents 1.4 mM [U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:4 condition ID:1
    Sample Contents 1.7 mM [U-13C; U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.7 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:2
    Sample Contents 1.7 mM [U-13C; U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.7 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:5 condition ID:1
    Sample Contents 1.4 mM [U-13C; U-15N]-Gua 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:5 condition ID:2
    Sample Contents 1.4 mM [U-13C; U-15N]-Gua 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:6 condition ID:1
    Sample Contents 1.4 mM [U-13C; U-15N]-Gua 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:6 condition ID:2
    Sample Contents 1.4 mM [U-13C; U-15N]-Gua 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:7 condition ID:1
    Sample Contents 1.4 mM [U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:7 condition ID:2
    Sample Contents 1.4 mM [U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.4 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:8 condition ID:1
    Sample Contents 1.3 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.3 mM [U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:8 condition ID:2
    Sample Contents 1.3 mM 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.3 mM [U-15N] 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
    IDs solution ID:9 condition ID:1
    Sample Contents 1.7 mM [U-13C; U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.7 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:9 condition ID:2
    Sample Contents 1.7 mM [U-13C; U-15N] 5'-R(*GP*AP*GP*CP*AP*GP*CP*AP*UP*CP*GP*UP*CP*GP*GP*CP*UP*GP*CP*UP*CP*A)-3', 1.7 mM 5'-R(*GP*CP*GP*GP*CP*AP*GP*UP*UP*GP*AP*CP*UP*AP*CP*UP*GP*UP*CP*GP*C)-3', 10 mM [U-2H] Tris, 50 mM sodium chloride, 0.05 mM sodium azide, 5 mM magnesium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50 mM NaCl, 5 mM MgCl2
    pH 7.0
    Pressure ambient
    Temperature 288
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 500
    Conformers Submitted Total Number 21
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:3 conditons ID:2
    Type 2D 1H-15N CPMG NOESY
    IDs experiment ID:11 solution ID:3 conditons ID:1
    Type 2D 1H-1H flip-back WATERGATE NOESY
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D 15N-edited NOESY-HSQC
    IDs experiment ID:13 solution ID:3 conditons ID:1
    Type 3D 15N-edited NOESY-HSQC
    IDs experiment ID:14 solution ID:2 conditons ID:1
    Type 2D 1H-13C CT-HSQC
    IDs experiment ID:15 solution ID:4 conditons ID:1
    Type 2D 1H-13C CT-HSQC
    IDs experiment ID:16 solution ID:5 conditons ID:1
    Type 2D 1H-13C CT-HSQC
    IDs experiment ID:17 solution ID:6 conditons ID:1
    Type 2D 1H-13C CT-HSQC
    IDs experiment ID:18 solution ID:9 conditons ID:1
    Type 3D 15N/13C-edited NOESY-HSQC
    IDs experiment ID:19 solution ID:10 conditons ID:1
    Type 3D 15N/13C-edited NOESY-HSQC
    IDs experiment ID:2 solution ID:3 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:20 solution ID:2 conditons ID:1
    Type 3D 13C-edited HMQC-NOESY
    IDs experiment ID:21 solution ID:4 conditons ID:1
    Type 3D 13C-edited HMQC-NOESY
    IDs experiment ID:22 solution ID:5 conditons ID:1
    Type 3D 13C-edited HMQC-NOESY
    IDs experiment ID:23 solution ID:6 conditons ID:1
    Type 3D 13C-edited HMQC-NOESY
    IDs experiment ID:24 solution ID:2 conditons ID:1
    Type 3D HCCH-COSY
    IDs experiment ID:25 solution ID:4 conditons ID:1
    Type 3D HCCH-COSY
    IDs experiment ID:26 solution ID:6 conditons ID:1
    Type 3D HCCH-COSY
    IDs experiment ID:27 solution ID:1 conditons ID:1
    Type 1D 15N-decoupled 1H WATERGATE
    IDs experiment ID:28 solution ID:3 conditons ID:1
    Type 1D 15N-decoupled 1H WATERGATE
    IDs experiment ID:29 solution ID:1 conditons ID:1
    Type 1D 15N-filtered 1H WATERGATE
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC NH2 only
    IDs experiment ID:30 solution ID:3 conditons ID:1
    Type 1D 15N-filtered 1H WATERGATE
    IDs experiment ID:31 solution ID:1 conditons ID:1
    Type 1D 15N-edited 1H WATERGATE
    IDs experiment ID:32 solution ID:3 conditons ID:1
    Type 1D 15N-edited 1H WATERGATE
    IDs experiment ID:33 solution ID:11 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:4 solution ID:3 conditons ID:1
    Type 2D 1H-15N HSQC NH2 only
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 2D 1H-15N NHH COSY
    IDs experiment ID:6 solution ID:3 conditons ID:1
    Type 2D 1H-15N NHH COSY
    IDs experiment ID:7 solution ID:7 conditons ID:1
    Type 2D 1H-15N HMQC J=21Hz
    IDs experiment ID:8 solution ID:8 conditons ID:1
    Type 2D 1H-15N HMQC J=21Hz
    IDs experiment ID:9 solution ID:1 conditons ID:2
    Type 2D 1H-15N CPMG NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors (CURVES) Lavery, R., Moakher, M., Maddocks, J.H., Petkeviciute, D. and Zakrzewska, K.
    Classification structure analysis
    Software Name CURVES_+
    Authors CCPN
    Classification peak picking
    Software Name CCPNMR_suite
    Authors CCPN
    Classification data analysis
    Software Name CCPNMR_suite
    Authors CCPN
    Classification chemical shift assignment
    Software Name CCPNMR_suite
    Authors Schrodinger
    Classification structure display
    Software Name PyMOL
    Authors Schrodinger
    Classification structure analysis
    Software Name PyMOL
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRDraw
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe