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An Information Portal to 108957 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2MF8
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 60
    pH 7.2
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
    Details THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA.
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 10
    Conformers Submitted Total Number 1
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D HN(CA)CO
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Bonvin, A. et al.
    Classification refinement
    Software Name HADDOCK