SOLUTION NMR Experimental Data


Experimental Details
Sample Conditions
Sample Contents0.2-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2-2 mM L2H, 90% H2O/10% D2O
Solvent90% H2O/10% D2O
Ionic Strength40
pH7
Pressuren/a
Temperature (K)298
Experiment(s):2D 1H-1H TOCSY, 2D 1H-1H NOESY
Sample Contents0.2-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2-2 mM L2H, 100% D2O
Solvent100% D2O
Ionic Strength90
pH7
Pressureambient
Temperature (K)310
Experiment(s):2D 1H-1H NOESY
Sample Contents0.2-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2-2 mM L2H, 100% D2O
Solvent100% D2O
Ionic Strength90
pH7
Pressuren/a
Temperature (K)298
Experiment(s):2D 1H-1H NOESY
Sample Contents0.2-2 mM DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2-2 mM L2H, 100% D2O
Solvent100% D2O
Ionic Strength40
pH7
Pressuren/a
Temperature (K)298
Experiment(s):2D 1H-1H TOCSY, 2D 1H-31P HSQC, 2D 1H-1H NOESY, 2D 1H-13C HSQC aromatic, 2D 1H-13C HSQC aliphatic
Sample Contents0.2 mM [U-99% 13C; U-99% 15N] DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2 mM L2H, 90% H2O/10% D2O
Solvent90% H2O/10% D2O
Ionic Strength90
pH7
Pressuren/a
Temperature (K)298
Experiment(s):1D JRHMBC
Sample Contents0.2 mM [U-99% 13C; U-99% 15N] DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2 mM L2H, 100% D2O
Solvent100% D2O
Ionic Strength90
pH7
Pressuren/a
Temperature (K)298
Experiment(s):2D 1H-13C HSQC aliphatic, 2D 1H-13C HSQC aromatic
Sample Contents0.2-1 mM [U-4% 13C] DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*A)-3'), 0.2-1 mM L2H, 90% H2O/10% D2O
Solvent90% H2O/10% D2O
Ionic Strength90
pH7
Pressuren/a
Temperature (K)298
Experiment(s):2D 1H-13C HSQC aliphatic, 2D 1H-13C HSQC aromatic
Spectrometer Information
Manufacturer Model Field Strength
Bruker AMX 600.0
Bruker AMX 700.0
Bruker AMX 400.0
NMR Refinement
Method DGSA-distance geometry simulated annealing, simulated annealing, molecular dynamics
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 100
Conformers Submitted Total Number 10
Representative Model Choice Rationale
1 lowest energy
Computation: NMR Software
# Classification Software Name Author
1 refinement AMBER Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo and Kollman
2 data analysis SPARKY Goddard
3 chemical shift assignment SPARKY Goddard
4 peak picking SPARKY Goddard
5 refinement X-PLOR_NIH Schwieters, Kuszewski, Tjandra and Clore
6 structure solution X-PLOR_NIH Schwieters, Kuszewski, Tjandra and Clore
7 collection TOPSPIN Bruker Biospin