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SOLUTION NMR
Materials and Methods page
2M93
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 700.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
    Field Strength 400.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.5-2.0 mM DNA-1, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 40 MM K+
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.5-2.0 mM DNA-2, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 40 MM K+
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 0.5-2.0 mM [U-2% 15N] DNA-3, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 40 MM K+
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:1
    Sample Contents 0.2-1.0 mM [U-100% 2H] DNA-4, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 40 MM K+
    pH 7
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method DGSA-distance geometry simulated annealing, Distance-restrained molecular dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:2 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:10 solution ID:4 conditons ID:1
    Type D-LABELED
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-1H JR NOESY
    IDs experiment ID:3 solution ID:2 conditons ID:1
    Type 2D 1H-1H COSY
    IDs experiment ID:4 solution ID:2 conditons ID:1
    Type 2D 1H-1H TOCSY
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 2D 1H-13C JR HMBC
    IDs experiment ID:7 solution ID:2 conditons ID:1
    Type 2D 1H-31P HSQC
    IDs experiment ID:8 solution ID:2 conditons ID:1
    Type H-D EXCHANGE
    IDs experiment ID:9 solution ID:3 conditons ID:1
    Type 15N-FILTERED
     
  •   Software and Computing Hide
    NMR Software
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH 2.29
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification processing
    Software Name X-PLOR_NIH 2.29
    Authors Felix NMR, Inc.
    Classification peak picking
    Software Name Felix 2007
    Authors Bruker Biospin
    Classification processing
    Software Name TOPSPIN 2.1