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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2M8K
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Bruker
    Model DRX
    Field Strength 500.0
    Manufacturer Bruker
    Model DRX
    Field Strength 600.0
    Manufacturer Bruker
    Model DRX
    Field Strength 800.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1 mM RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:1 condition ID:2
    Sample Contents 1 mM RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 1 mM RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:2 condition ID:2
    Sample Contents 1 mM RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Ade,Uri RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:3 condition ID:2
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Ade,Uri RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:1
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Ade,Uri RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:4 condition ID:2
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Ade,Uri RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
    IDs solution ID:5 condition ID:1
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Cyt,Gua RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:5 condition ID:2
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Cyt,Gua RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
    IDs solution ID:6 condition ID:1
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Cyt,Gua RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:6 condition ID:2
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Cyt,Gua RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
    IDs solution ID:7 condition ID:1
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Ade,Uri,Cyt,Gua RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 283
    IDs solution ID:7 condition ID:2
    Sample Contents 1 mM [U-98% 13C; U-98% 15N]-Ade,Uri,Cyt,Gua RNA (48-MER), 10 mM TRIS, 0.5 mM Magnesium Chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 10
    pH 6.3
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 200
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 11echo NOESY
    IDs experiment ID:10 solution ID:3 conditons ID:1
    Type 2D HNNOESY
    IDs experiment ID:11 solution ID:5 conditons ID:1
    Type 2D HNNOESY
    IDs experiment ID:12 solution ID:3 conditons ID:1
    Type HNN-COSY
    IDs experiment ID:13 solution ID:5 conditons ID:1
    Type HNN-COSY
    IDs experiment ID:14 solution ID:3 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:15 solution ID:5 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:16 solution ID:2 conditons ID:2
    Type 2D 1H-1H TOCSY
    IDs experiment ID:2 solution ID:4 conditons ID:2
    Type 2D 13C Filtered/Edited NOESY
    IDs experiment ID:3 solution ID:6 conditons ID:2
    Type 2D 13C Filtered/Edited NOESY
    IDs experiment ID:4 solution ID:2 conditons ID:2
    Type 2D NOESY presat
    IDs experiment ID:5 solution ID:4 conditons ID:2
    Type 2D HCCH-COSY, 3D HCCH-TOCSY
    IDs experiment ID:6 solution ID:6 conditons ID:2
    Type 2D HCCH COSY, 3D HCCH-TOCSY
    IDs experiment ID:7 solution ID:4 conditons ID:2
    Type 2D 1H-13C HSQC
    IDs experiment ID:8 solution ID:6 conditons ID:2
    Type 2D 1H-13C HSQC
    IDs experiment ID:9 solution ID:7 conditons ID:2
    Type 2D 1H-13C HSQC
     
  •   Software and Computing Hide
    NMR Software
    Authors Bruker Biospin
    Classification processing
    Software Name TOPSPIN
    Authors Bruker Biospin
    Classification data analysis
    Software Name TOPSPIN
    Authors Bruker Biospin
    Classification chemical shift assignment
    Software Name TOPSPIN
    Authors Bruker Biospin
    Classification processing
    Software Name xwinnmr
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH
    Authors Koradi, Billeter and Wuthrich
    Classification data analysis
    Software Name Molmol
    Authors Koradi, Billeter and Wuthrich
    Classification structure solution
    Software Name Molmol
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification chemical shift calculation
    Software Name NMRDraw
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification data analysis
    Software Name NMRDraw
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification peak picking
    Software Name NMRDraw
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY
    Authors Goddard
    Classification data analysis
    Software Name SPARKY
    Authors Goddard
    Classification peak picking
    Software Name SPARKY
    Authors Bruker Biospin
    Classification chemical shift assignment
    Software Name xwinnmr
    Authors Bruker Biospin
    Classification data analysis
    Software Name xwinnmr