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SOLUTION NMR
Materials and Methods page
2M8A
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    closest to the average  
     
    Spectrometer Info
    Field Strength 700.0
    Manufacturer Bruker
    Model Avance
    Field Strength 800.0
    Manufacturer Varian
    Model INOVA
    Field Strength 800.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.6 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(UFT)P*(CFL)P*(GFZ)P*(CFL)P*(GFZ))-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 125
    pH 7.0
    Pressure ambient
    Pressure Units atm
    Temperature 283
    IDs solution ID:1 condition ID:2
    Sample Contents 0.6 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(UFT)P*(CFL)P*(GFZ)P*(CFL)P*(GFZ))-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 125
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.6 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(UFT)P*(CFL)P*(GFZ)P*(CFL)P*(GFZ))-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 125
    pH 7.0
    Pressure ambient
    Pressure Units atm
    Temperature 283
    IDs solution ID:2 condition ID:2
    Sample Contents 0.6 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(UFT)P*(CFL)P*(GFZ)P*(CFL)P*(GFZ))-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 125
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method molecular dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 20
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:2 conditons ID:2
    Type 2D 1H-1H NOESY
    IDs experiment ID:3 solution ID:2 conditons ID:2
    Type 2D DQF-COSY
    IDs experiment ID:4 solution ID:2 conditons ID:2
    Type 2D 1H-1H TOCSY
     
  •   Software and Computing Hide
    NMR Software
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification refinement
    Software Name AMBER
    Authors Goddard
    Classification peak picking
    Software Name SPARKY
    Authors Koradi, Billeter and Wuthrich
    Classification data analysis
    Software Name Molmol
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification geometry optimization
    Software Name AMBER