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SOLUTION NMR
Materials and Methods page
2M53
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    fewest violations  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Varian/Agilent
    Model VNMRS
    Field Strength 600.0
    Manufacturer Varian/Agilent
    Model VNMRS
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.5 mM DNA(25-MER)-1, 10 mM potassium phosphate-2, 90 mM potassium chloride-3, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 273
    IDs solution ID:1 condition ID:2
    Sample Contents 0.5 mM DNA(25-MER)-1, 10 mM potassium phosphate-2, 90 mM potassium chloride-3, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:3
    Sample Contents 0.5 mM DNA(25-MER)-1, 10 mM potassium phosphate-2, 90 mM potassium chloride-3, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.5 mM DNA(25-MER)-4, 10 mM potassium phosphate-5, 40 mM potassium chloride-6, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 273
    IDs solution ID:2 condition ID:2
    Sample Contents 0.5 mM DNA(25-MER)-4, 10 mM potassium phosphate-5, 40 mM potassium chloride-6, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:3
    Sample Contents 0.5 mM DNA(25-MER)-4, 10 mM potassium phosphate-5, 40 mM potassium chloride-6, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 0.5 mM DNA(25-MER)-7, 10 mM potassium phosphate-8, 90 mM potassium chloride-9, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 273
    IDs solution ID:3 condition ID:2
    Sample Contents 0.5 mM DNA(25-MER)-7, 10 mM potassium phosphate-8, 90 mM potassium chloride-9, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:3
    Sample Contents 0.5 mM DNA(25-MER)-7, 10 mM potassium phosphate-8, 90 mM potassium chloride-9, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 50
    pH 7.0
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the least restraint violations
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:3 conditons ID:2
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:3 conditons ID:2
    Type 2D DQF-COSY
    IDs experiment ID:3 solution ID:3 conditons ID:2
    Type 2D 1H-1H TOCSY
    IDs experiment ID:4 solution ID:1 conditons ID:2
    Type 2D 1H-1H NOESY
    IDs experiment ID:5 solution ID:2 conditons ID:3
    Type 2D 1H-1H NOESY
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Agilent Technologies
    Classification collection
    Software Name VNMRJ
    Authors Goddard
    Classification peak picking
    Software Name SPARKY
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification data analysis
    Software Name AMBER 11
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification refinement
    Software Name AMBER 11
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification structure solution
    Software Name AMBER 11