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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
2M4M
Solution structure of the RRM domain of the hypothetical protein CAGL0M09691g from Candida glabrata
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Biological Assembly (gz) (A)
NMR Restraints (Text)
NMR Restraints (gz)
V2 NMR Restraints (gz)
Chemical Shifts (gz)
SOLUTION NMR Experimental Data
Experimental Details
Sample Conditions
Sample Contents
1.0 mM [U-100% 13C; U-100% 15N] RRM domain of the hypothetical protein, 10 mM sodium acetate, 100 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 90% H2O, 10% D2O
Solvent
90% H2O/10% D2O
Ionic Strength
110
pH
4.5
Pressure
1
Temperature (K)
298
Experiment(s):
15N HSQC, HNCOCA, HNCACB, CBCACONH, 15N NOESY-HSQC, HNCO, HNCACO, HNCA
Sample Contents
1.0 mM [U-100% 13C; U-100% 15N] RRM domain of the hypothetical protein, 10 mM sodium acetate, 100 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 100% D2O
Solvent
100% D2O
Ionic Strength
110
pH
4.5
Pressure
1
Temperature (K)
298
Experiment(s):
13C HSQC, aromatic 13C HSQC, 13C NOESY-HSQC, 13C aromatic NOESY-HSQC
Spectrometer Information
Manufacturer
Model
Field Strength
Varian
INOVA
600.0
Bruker
Avance
800.0
NMR Refinement
Method
simulating annealing
Details
Refinement in a box of water
NMR Ensemble Information
Conformer Selection Criteria
20 structures for lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model Choice Rationale
1
lowest energy
Additional NMR Experimental Information
1
All 3D experiments were acquired with 30% non-uniform sampling using the MDDNMR approach
Computation: NMR Software
#
Classification
Software Name
Author
1
refinement version: 1.21
CNS
Brunger A. T. et.al.
2
collection version: 2.2D
VNMRJ
Varian
3
collection version: 2.1
TOPSPIN
Bruker Biospin
4
collection version: 2.2
MDDNMR
(MDDNMR) Orekhov, Jaravine, Kazimierczuk
5
processing version: 2.2
MDDNMR
(MDDNMR) Orekhov, Jaravine, Kazimierczuk
6
data analysis version: 2.2
CCPN_Analysis
CCPN
7
data analysis version: 2.3
ARIA
Linge, O'Donoghue and Nilges
8
structure solution version: 2.32
X-PLOR_NIH
Schwieters, Kuszewski, Tjandra and Clore
9
refinement
X-PLOR_NIH
--