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An Information Portal to 108957 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2M2D
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    closest to the average  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.5 mM [U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 0.125
    pH 6.4
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.5 mM [U-13C; U-15N] protein, 25 mM potassium phosphate, 100 mM sodium chloride, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 0.125
    pH 6.4
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 0.5 mM protein, 25 mM potassium phosphate, 100 mM sodium chloride, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.125
    pH 6.4
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method DGSA-distance geometry simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the least restraint violations
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 35
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:2 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:3 conditons ID:1
    Type 2D 1H-1H TOCSY
    IDs experiment ID:4 solution ID:3 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:6 solution ID:2 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:7 solution ID:2 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:8 solution ID:2 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:9 solution ID:1 conditons ID:1
    Type 3D 1H-15N TOCSY
     
  •   Software and Computing Hide
    NMR Software
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification refinement
    Software Name AMBER
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification structure solution
    Software Name AMBER
    Authors Guntert, Mumenthaler and Wuthrich
    Classification structure solution
    Software Name CYANA
    Authors Goddard
    Classification data analysis
    Software Name SPARKY
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN