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SOLUTION NMR
Materials and Methods page
2M11
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
    Field Strength 800.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.53 mM 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', 100 mM sodium chloride, 50 uM EDTA, 10 mM sodium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 283
    IDs solution ID:1 condition ID:2
    Sample Contents 0.53 mM 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', 100 mM sodium chloride, 50 uM EDTA, 10 mM sodium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 278
    IDs solution ID:2 condition ID:1
    Sample Contents 0.53 mM 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', 10 mM sodium phosphate, 50 uM EDTA, 100 mM sodium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 283
    IDs solution ID:2 condition ID:2
    Sample Contents 0.53 mM 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', 10 mM sodium phosphate, 50 uM EDTA, 100 mM sodium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 100
    pH 7.0
    Pressure ambient
    Temperature 278
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria back calculated data agree with experimental NOESY spectrum
    Conformers Calculated Total Number 10
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-1H COSY
    IDs experiment ID:3 solution ID:2 conditons ID:2
    Type 2D 1H-1H NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Goddard
    Classification chemical shift calculation
    Software Name SPARKY
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY
    Authors Thomas L. James
    Classification processing
    Software Name MARDIGRAS
    Authors Ravishankar, G. et al.
    Classification data analysis
    Software Name CURVES 5.3
    Authors Thomas L. James
    Classification data analysis
    Software Name CORMA
    Authors Bruker Biospin
    Classification processing
    Software Name TOPSPIN
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
    Classification refinement
    Software Name AMBER