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SOLUTION NMR
Materials and Methods page
2LZW
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Varian
    Model VNMRS
    Field Strength 800.0
    Manufacturer Varian
    Model Unity Inova
    Field Strength 500.0
    Manufacturer Varian
    Model Unity Inova
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1 mM DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.1
    pH 7.5
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:2
    Sample Contents 1 mM DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.1
    pH 7.5
    Pressure ambient
    Temperature 273
    IDs solution ID:2 condition ID:1
    Sample Contents 1 mM DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.1
    pH 7.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:2
    Sample Contents 1 mM DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.1
    pH 7.5
    Pressure ambient
    Temperature 273
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the least restraint violations and the lowest energy
    Conformers Calculated Total Number 20
    Conformers Submitted Total Number 11
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D TOCSY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 2D DQF-COSY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 2D 1H-31P HSQC
    IDs experiment ID:5 solution ID:2 conditons ID:2
    Type 2D NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Varian
    Classification collection
    Software Name VNMRJ
    Authors Johnson, One Moon Scientific
    Classification data analysis
    Software Name NMRView
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNS 1.2