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SOLUTION NMR
Materials and Methods page
2LYB
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 700.0
    Manufacturer Bruker
    Model Avance II
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.4 mM [U-95% 13C] MA, 0.8-1.0 mM 1,2-dioctanoyl-sn-glycero-3-phospho-L-serine, sodium salt, 50 mM sodium phosphate, 2 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50
    pH 5.5
    Pressure ambient
    Temperature 308
    IDs solution ID:2 condition ID:1
    Sample Contents 0.4-1.0 mM [U-95% 13C; U-95% 15N] MA, 0.8-1.0 mM 1,2-dioctanoyl-sn-glycero-3-phospho-L-serine, sodium salt, 50 mM sodium phosphate, 2 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50
    pH 5.5
    Pressure ambient
    Temperature 308
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing, torsion angle dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 3D 13C-edited/13C-filtered NOESY
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:11 solution ID:2 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:4 solution ID:2 conditons ID:1
    Type 3D HNCA
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 3D HN(CO)CA
    IDs experiment ID:6 solution ID:2 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:7 solution ID:2 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:8 solution ID:2 conditons ID:1
    Type 3D 1H-15N TOCSY
    IDs experiment ID:9 solution ID:2 conditons ID:1
    Type 3D 1H-15N NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Guntert, Mumenthaler and Wuthrich
    Classification refinement
    Software Name CYANA 2.1
    Authors CCPN
    Classification data analysis
    Software Name CCPN_Analysis
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN
    Authors Guntert, Mumenthaler and Wuthrich
    Classification structure solution
    Software Name CYANA 2.1