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SOLUTION NMR
Materials and Methods page
2LX7
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
    Field Strength 850.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.45 mM [U-10% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 50 uM DSS, 100% D2O
    Solvent System 100% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type 3D HNCA
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type 3D HN(CO)CA
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D H(CCO)NH
    IDs experiment ID:13 solution ID:1 conditons ID:1
    Type 3D C(CO)NH
    IDs experiment ID:14 solution ID:1 conditons ID:1
    Type 3D HBHA(CO)NH
    IDs experiment ID:15 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:16 solution ID:1 conditons ID:1
    Type 3D HCCH-COSY
    IDs experiment ID:17 solution ID:1 conditons ID:1
    Type 3D HNHA
    IDs experiment ID:18 solution ID:3 conditons ID:1
    Type 3D (H)CCH-TOCSY
    IDs experiment ID:19 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC-arom
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:20 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC-Histidine
    IDs experiment ID:21 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC - NC5
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY aliphatic
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY aromatic
    IDs experiment ID:9 solution ID:3 conditons ID:1
    Type 4D CC-NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNS
    Authors Bhattacharya, Montelione
    Classification structure validation
    Software Name PSVS
    Authors Shen, Cornilescu, Delaglio and Bax
    Classification geometry optimization
    Software Name TALOS+
    Authors Goddard
    Classification data analysis
    Software Name SPARKY
    Authors Bahrami, Markley, Assadi, and Eghbalnia
    Classification chemical shift assignment
    Software Name PINE
    Authors Varian
    Classification collection
    Software Name VNMRJ
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Zimmerman, Moseley, Kulikowski and Montelione
    Classification data analysis,chemical shift assignment
    Software Name AutoAssign 2.1
    Authors Huang, Tejero, Powers and Montelione
    Classification data analysis,refinement
    Software Name AutoStructure 2.1
    Authors Guntert, Mumenthaler and Wuthrich
    Classification refinement,geometry optimization,structure solution
    Software Name CYANA 3.0
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinemen,structure solution,geometry optimization
    Software Name CNS