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SOLUTION NMR
Materials and Methods page
2LWH
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 0.9 mM NETROPSIN, 100% D2O
    Solvent System 100% D2O
    pH 7
    Pressure ambient
    Temperature 278
    IDs solution ID:2 condition ID:1
    Sample Contents 0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 0.9 mM NETROPSIN, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 7
    Pressure ambient
    Temperature 278
    IDs solution ID:3 condition ID:1
    Sample Contents 0.6 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 9 mg/mL Pf1 phage, 0.6 mM NETROPSIN, 100% D2O
    Solvent System 100% D2O
    pH 7
    Pressure ambient
    Temperature 278
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing, molecular dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria target function
    Conformers Calculated Total Number 9500
    Conformers Submitted Total Number 11
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 2D DQF-COSY
    IDs experiment ID:4 solution ID:3 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:5 solution ID:3 conditons ID:1
    Type 2D 1H-13C HSQC aliphatic
    IDs experiment ID:6 solution ID:3 conditons ID:1
    Type 2D 1H-13C HSQC aromatic
     
  •   Software and Computing Hide
    NMR Software
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman
    Classification refinement
    Software Name AMBER 9
    Authors Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman
    Classification structure solution
    Software Name AMBER 9