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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2LV0
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    closest to the average  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Varian
    Model INOVA
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:2
    Sample Contents 1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 283
    IDs solution ID:2 condition ID:1
    Sample Contents 1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:2
    Sample Contents 1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 283
    IDs solution ID:3 condition ID:1
    Sample Contents 1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:2
    Sample Contents 1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 283
    IDs solution ID:4 condition ID:1
    Sample Contents 1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:2
    Sample Contents 1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 283
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria target function
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 11
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:4 conditons ID:2
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type 2D 1H-15N HMQC
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type 2D 1H-13C ctHSQC-31P
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 2D 1H-15N HCN
    IDs experiment ID:13 solution ID:4 conditons ID:2
    Type 3D 1H-15N NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:6 solution ID:2 conditons ID:1
    Type 2D DQF-COSY
    IDs experiment ID:7 solution ID:3 conditons ID:2
    Type 2D 1H-1H NOESY
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type 3D HCCH-COSY
    IDs experiment ID:9 solution ID:2 conditons ID:1
    Type 2D 1H-31P HetCor
     
  •   Software and Computing Hide
    NMR Software
    Authors Varian
    Classification refinement
    Software Name VNMR
    Authors Varian
    Classification collection
    Software Name VNMR
    Authors Accelrys Software Inc.
    Classification refinement
    Software Name Felix
    Authors Accelrys Software Inc.
    Classification processing
    Software Name Felix
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH