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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2LUZ
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Bruker
    Model AvanceIII
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
    Field Strength 800.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] mir12.006, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] mir12.006, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 100 % D2O, 50 uM DSS, 100% D2O
    Solvent System 100% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 0.9 mM [U-100% 13C; U-100% 15N] mir12.011, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:1
    Sample Contents 0.9 mM [U-100% 15N], 5% 13C stereo mir12.008, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 6.5
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
    Details CNS WATER REFINEMENT
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:4 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:11 solution ID:2 conditons ID:1
    Type 4D CC-NOESY
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D HBHA(CO)NH
    IDs experiment ID:13 solution ID:1 conditons ID:1
    Type 3D HCCH-COSY
    IDs experiment ID:14 solution ID:1 conditons ID:1
    Type 3D C(CO)NH
    IDs experiment ID:15 solution ID:1 conditons ID:1
    Type 3D H(CCO)NH
    IDs experiment ID:16 solution ID:3 conditons ID:1
    Type NUS 3D 1H-13C NOESY aliphatic
    IDs experiment ID:17 solution ID:3 conditons ID:1
    Type NUS 3D 1H-15N NOESY
    IDs experiment ID:18 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY aliphatic
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY aromatic
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:9 solution ID:2 conditons ID:1
    Type 3D (H)CCH-TOCSY
     
  •   Software and Computing Hide
    NMR Software
    Authors Alex Lemak, Cheryl Arrowsmith, University of Toronto
    Classification refinement
    Software Name FMCGUI
    Authors Bhattacharya, Montelione
    Classification structure validation
    Software Name PSVS 1.5
    Authors PALES (Zweckstetter, Bax)
    Classification geometry optimization
    Software Name PALES
    Authors Shen, Cornilescu, Delaglio and Bax
    Classification geometry optimization
    Software Name TALOS+
    Authors Goddard
    Classification data analysis
    Software Name SPARKY 3.113
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNS 1.3
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification structure solution
    Software Name CNS 1.3
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification geometry optimization
    Software Name CNS 1.3
    Authors Guntert, Mumenthaler and Wuthrich
    Classification refinement
    Software Name CYANA 3.0
    Authors Guntert, Mumenthaler and Wuthrich
    Classification geometry optimization
    Software Name CYANA 3.0
    Authors Guntert, Mumenthaler and Wuthrich
    Classification structure solution
    Software Name CYANA 3.0
    Authors Huang, Tejero, Powers and Montelione
    Classification data analysis
    Software Name AutoStructure ASDP-1.0
    Authors Huang, Tejero, Powers and Montelione
    Classification refinement
    Software Name AutoStructure ASDP-1.0
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe 2008 linux9
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN 2.1.4 and 3.1
    Authors Varian
    Classification collection
    Software Name VNMRJ 1.1 D
    Authors Bahrami, Markley, Assadi, and Eghbalnia
    Classification chemical shift assignment
    Software Name PINE