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An Information Portal to 105025 Biological Macromolecular Structures

SOLID-STATE NMR
Materials and Methods page
2LTQ
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Varian
    Model VXRS
    Field Strength 750.0
    Manufacturer Varian
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 7 mg [U-100% 13C; U-100% 15N] DsbB, 2 mg DDM, 7 mg E. coli lipids, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 7.8
    Pressure ambient
    Temperature 261
    IDs solution ID:2 condition ID:1
    Sample Contents 5 mg [2-13C-glycerol; U-15N] DsbB, 2 mg DDM, 7 mg E. coli lipids, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 7.8
    Pressure ambient
    Temperature 261
    IDs solution ID:3 condition ID:1
    Sample Contents 4 mg [1,3-13C-glycerol; U-15N] DsbB, 2 mg DDM, 7 mg E. coli lipids, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    pH 7.8
    Pressure ambient
    Temperature 261
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
    Details JOINT CALCULATION OF DSBB C41S FAB WITH SOLID-STATE NMR RESTRAINTS AND X-RAY REFLECTIONS (X-RAY DATA ARE FROM PDB ID: 2ZUQ)
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 200
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D CC DARR
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D CC DARR
    IDs experiment ID:3 solution ID:3 conditons ID:1
    Type 2D CC DARR
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D NCACX
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D NCOCX
     
  •   Additional NMR Experimental Information Hide
    Details
    Detail Chemical shifts assignments and CC correlations provide dihedral angle and distance restraints.
     
  •   Software and Computing Hide
    NMR Software
    Authors Varian
    Classification collection
    Software Name VNMRJ
    Authors Shen, Cornilescu, Delaglio and Bax
    Classification data analysis
    Software Name TALOS+
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY