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An Information Portal to 105025 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2LS0
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 2.4 mM [U-95% 13C; U-90% 15N] protein, 10 mM potassium phosphate, 0.1 mM sodium azide, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 0.02
    pH 7.0
    Pressure ambient
    Temperature 297
    IDs solution ID:2 condition ID:1
    Sample Contents 0.7-1.4 mM [U-90% 15N] protein, 10 mM potassium phosphate, 0.1 mM sodium azide, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 0.02
    pH 7.0
    Pressure ambient
    Temperature 297
    IDs solution ID:3 condition ID:1
    Sample Contents 0.7-1.4 mM protein, 10 mM potassium phosphate, 0.1 mM sodium azide, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.02
    pH 7.0
    Pressure ambient
    Temperature 297
    IDs solution ID:4 condition ID:1
    Sample Contents 0.7-1.4 mM protein, 10 mM potassium phosphate, 0.1 mM sodium azide, 99.8% D2O
    Solvent System 99.8% D2O
    Ionic Strength 0.02
    pH 7.0
    Pressure ambient
    Temperature 297
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing, molecular dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:2 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type 3D HNHA
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:13 solution ID:2 conditons ID:1
    Type 3D 1H-15N TOCSY
    IDs experiment ID:14 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:15 solution ID:1 conditons ID:1
    Type 3D CCC-TOCSY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:3 conditons ID:1
    Type 2D 1H-1H TOCSY
    IDs experiment ID:4 solution ID:3 conditons ID:1
    Type 2D DQF-COSY
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D HNCA
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:9 solution ID:1 conditons ID:1
    Type 3D HN(CO)CA
     
  •   Software and Computing Hide
    NMR Software
    Authors Guex, Peitsch, Schwede, and Diemand
    Classification molecular graphics
    Software Name DeepView/Swiss-PDBViewer
    Authors Schrodinger, LLC
    Classification molecular graphics
    Software Name PyMOL 1.5.0.1
    Authors Cornilescu, Delaglio and Bax
    Classification diheral determination
    Software Name TALOS
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN 1.2
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification structure solution
    Software Name CNSSOLVE 1.2
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNSSOLVE 1.2
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification data analysis
    Software Name NMRDraw
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification peak picking
    Software Name NMRDraw
    Authors Garrett
    Classification peak picking
    Software Name PIPP
    Authors Johnson, One Moon Scientific
    Classification peak picking
    Software Name NMRView
    Authors Johnson, One Moon Scientific
    Classification data analysis
    Software Name NMRView
    Authors Goddard
    Classification data analysis
    Software Name SPARKY
    Authors Linge, O'Donoghue and Nilges
    Classification structure solution
    Software Name ARIA 2.0
    Authors Laskowski and MacArthur
    Classification quality checking
    Software Name ProcheckNMR