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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2LRS
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Varian
    Model VXRS
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 800 mM [U-100% 13C; U-100% 15N] protein, 50 mM HEPES, 0.05 % sodium azide, 1 mM PMSF, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.05
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:2
    Sample Contents 800 mM [U-100% 13C; U-100% 15N] protein, 50 mM HEPES, 0.05 % sodium azide, 1 mM PMSF, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.75
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 600 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 5 % C12/E5-Hexanol, 10 mM DTT, 1 mM PMSF, 0.05 % sodium azide, 50 mM sodium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.05
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:2
    Sample Contents 600 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 5 % C12/E5-Hexanol, 10 mM DTT, 1 mM PMSF, 0.05 % sodium azide, 50 mM sodium chloride, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.75
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 800 mM protein, 50 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.05
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:2
    Sample Contents 800 mM protein, 50 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.75
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:1
    Sample Contents 600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.05
    pH 7
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:2
    Sample Contents 600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.75
    pH 7
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method molecular dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 1000
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:4 conditons ID:2
    Type 3D H(CCO)NH
    IDs experiment ID:11 solution ID:4 conditons ID:2
    Type 3D HCCH-TOCSY
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:13 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:14 solution ID:3 conditons ID:2
    Type 2D 1H-1H NOESY
    IDs experiment ID:15 solution ID:3 conditons ID:2
    Type 2D 1H-1H TOCSY
    IDs experiment ID:16 solution ID:2 conditons ID:2
    Type 2D 15N-IPAP-HSQC
    IDs experiment ID:17 solution ID:4 conditons ID:2
    Type 3D HNHA
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:4 conditons ID:2
    Type 3D HNCO
    IDs experiment ID:4 solution ID:4 conditons ID:2
    Type 3D HNCA
    IDs experiment ID:5 solution ID:4 conditons ID:2
    Type 3D HNCACB
    IDs experiment ID:6 solution ID:4 conditons ID:2
    Type 3D HN(CO)CA
    IDs experiment ID:7 solution ID:4 conditons ID:2
    Type 3D HN(CO)CACB
    IDs experiment ID:8 solution ID:4 conditons ID:2
    Type 3D HN(CA)CO
    IDs experiment ID:9 solution ID:4 conditons ID:2
    Type 3D HN(CA)HA
     
  •   Software and Computing Hide
    NMR Software
    Authors Johnson, One Moon Scientific
    Classification chemical shift assignment
    Software Name NMRView
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Brunger, Adams, Clore, Gros, Nilges, and Read
    Classification refinement
    Software Name CNS
    Authors Brunger, Adams, Clore, Gros, Nilges, and Read
    Classification structure solution
    Software Name CNS