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SOLUTION NMR
Materials and Methods page
2LRN
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 900.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Varian
    Model Inova
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1 mM [U-13C; U-15N] thiol:disulfide interchange protein, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 70
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 303
    IDs solution ID:2 condition ID:1
    Sample Contents 1 mM [U-13C; U-15N] thiol:disulfide interchange protein, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 70
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 303
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulating annealing
    Details Refinement in a box of water
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria 20 structures for lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type HNCOCA
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type HNCACB
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type CBCACONH
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 15N NOESY-HSQC
    IDs experiment ID:3 solution ID:2 conditons ID:1
    Type 13C CT-HSQC
    IDs experiment ID:4 solution ID:2 conditons ID:1
    Type aromatic 13C HSQC
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 13C NOESY-HSQC
    IDs experiment ID:6 solution ID:2 conditons ID:1
    Type 13C aromatic NOESY-HSQC
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type HNCO
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type HNCACO
    IDs experiment ID:9 solution ID:1 conditons ID:1
    Type HNCA
     
  •   Additional NMR Experimental Information Hide
    Details
    Detail 3D experiments acquired with NUS using the MDDNMR approach
     
  •   Software and Computing Hide
    NMR Software
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN 2.1
    Authors Varian
    Classification collection
    Software Name VNMRJ 2.2D
    Authors Lemak, Gutmanas, Chitayat, Karra, Fares, Sunnerhagen, Arrowsmith
    Classification processing
    Software Name MDDGUI 1.0
    Authors Lemak, Gutmanas, Chitayat, Karra, Fares, Sunnerhagen, Arrowsmith
    Classification collection
    Software Name MDDGUI 1.0
    Authors Orekhov, Jaravine, Kazimierczuk
    Classification collection
    Software Name MDDNMR 2.0
    Authors Orekhov, Jaravine, Kazimierczuk
    Classification processing
    Software Name MDDNMR 2.0
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe 5.4
    Authors Linge, O'Donoghue and Nilges
    Classification data analysis
    Software Name ARIA 2.3
    Authors CCPN
    Classification chemical shift assignment
    Software Name CCPN 2.1.5
    Authors CCPN
    Classification peak picking
    Software Name CCPN 2.1.5
    Authors Brunger A. T. et.al.
    Classification structure solution
    Software Name CNS 1.21
    Authors Brunger A. T. et.al.
    Classification refinement
    Software Name CNS 1.21