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SOLUTION NMR
Materials and Methods page
2LQG
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Bruker
    Model ARX
    Field Strength 600.0
    Manufacturer Bruker
    Model DMX
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.8 mM [U-100% 15N] Domain A, 10 % [U-100% 2H] D2O, 50 mM sodium chloride, 20 mM sodium phosphate, 2 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 0.8 mM [U-100% 13C; U-100% 15N] Domain A, 10 % [U-100% 2H] D2O, 50 mM sodium chloride, 20 mM sodium phosphate, 2 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 50
    pH 6.5
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing, molecular dynamics, torsion angle dynamics
    Details FINAL STRUCTURES REFINED IN EXPLICIT WATER BATH AS IMPLEMENTED IN ARIA 1.2/CNS 1.1. 20 LOWEST ENERGY STRUCTURES SELECTED FROM WATER REFINEMENT, CNS, INITIAL STRUCTURES GENERATED WITH CYANA
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 200
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:2 conditons ID:1
    Type 3D HN(CO)CA
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:4 solution ID:2 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:6 solution ID:2 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:7 solution ID:2 conditons ID:1
    Type 3D HNCA
    IDs experiment ID:8 solution ID:2 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:9 solution ID:2 conditons ID:1
    Type 3D HNCACB
     
  •   Software and Computing Hide
    NMR Software
    Authors Linge, O'Donoghue and Nilges
    Classification refinement
    Software Name ARIA 1.2
    Authors Linge, O'Donoghue and Nilges
    Classification structure solution
    Software Name ARIA 1.2
    Authors Linge, O'Donoghue and Nilges
    Classification geometry optimization
    Software Name ARIA 1.2
    Authors Bruker Biospin
    Classification processing
    Software Name TOPSPIN 2.1
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN 2.1
    Authors CCPN
    Classification refinement
    Software Name Analysis 2.1.5
    Authors CCPN
    Classification peak picking
    Software Name Analysis 2.1.5
    Authors CCPN
    Classification chemical shift assignment
    Software Name Analysis 2.1.5
    Authors CCPN
    Classification data analysis
    Software Name Analysis 2.1.5
    Authors Guntert, Mumenthaler and Wuthrich
    Classification geometry optimization
    Software Name CYANA 2.1
    Authors Guntert, Mumenthaler and Wuthrich
    Classification structure solution
    Software Name CYANA 2.1