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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2LMJ
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance II
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:2
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 293
    IDs solution ID:1 condition ID:3
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 288
    IDs solution ID:1 condition ID:4
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 283
    IDs solution ID:1 condition ID:5
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 303
    IDs solution ID:1 condition ID:6
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 308
    IDs solution ID:2 condition ID:1
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:2
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 293
    IDs solution ID:2 condition ID:3
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 288
    IDs solution ID:2 condition ID:4
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 283
    IDs solution ID:2 condition ID:5
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 303
    IDs solution ID:2 condition ID:6
    Sample Contents 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.5
    Pressure ambient
    Temperature 308
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method molecular dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type 3D HBHANH
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type 3D HN(CA)CO
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D C(CO)NH
    IDs experiment ID:13 solution ID:1 conditons ID:1
    Type 3D H(CCO)NH
    IDs experiment ID:14 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:15 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:16 solution ID:2 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:17 solution ID:2 conditons ID:1
    Type 3D CCH-TOCSY
    IDs experiment ID:18 solution ID:2 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:19 solution ID:1 conditons ID:2
    Type 2D 1H-15N HSQC
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:20 solution ID:1 conditons ID:3
    Type 2D 1H-15N HSQC
    IDs experiment ID:21 solution ID:1 conditons ID:4
    Type 2D 1H-15N HSQC
    IDs experiment ID:22 solution ID:1 conditons ID:5
    Type 2D 1H-15N HSQC
    IDs experiment ID:23 solution ID:1 conditons ID:6
    Type 2D 1H-15N HSQC
    IDs experiment ID:24 solution ID:1 conditons ID:1
    Type 1H
    IDs experiment ID:25 solution ID:2 conditons ID:1
    Type 1H
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D HNCA
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type 3D HBHA(CO)NH
    IDs experiment ID:9 solution ID:1 conditons ID:1
    Type 3D HN(CO)CA
     
  •   Software and Computing Hide
    NMR Software
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN 2.1p4
    Authors Cornilescu, Delaglio and Bax
    Classification data analysis
    Software Name TALOS +
    Authors Fred Damberger
    Classification peak picking
    Software Name CARA 1.0
    Authors Fred Damberger
    Classification chemical shift assignment
    Software Name CARA 1.0
    Authors T. D. Goddard and D. G. Kneller,
    Classification chemical shift assignment
    Software Name SPARKY 3.114
    Authors Guntert, Mumenthaler and Wuthrich
    Classification refinement
    Software Name CYANA 3.0
    Authors Guntert, Mumenthaler and Wuthrich
    Classification structure solution
    Software Name CYANA 3.0