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SOLUTION NMR
Materials and Methods page
2LM0
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    n/a  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Bruker
    Model US2
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 9.3 mM Bis-Tris, 15.8 mM MES, 100 mM sodium chloride, 1 mM DTT, 5 % D-99% D2O, 400 uM [U-100% 13C; U-100% 15N] Protein, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 100
    pH 6.0
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 15.8 mM MES, 9.3 mM Bis-Tris, 100 mM sodium chloride, 1 mM DTT, 5 % D-99% D2O, 2 mM [U-100% 13C; U-100% 15N] protein, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 100
    pH 6.0
    Pressure ambient
    Temperature 298
    IDs solution ID:3 condition ID:1
    Sample Contents 9.3 mM Bis-Tris, 15.8 mM MES, 100 mM sodium chloride, 1 mM DTT, 5 % D-99% D2O, 400 uM [U-100% 13C; U-100% 15N] Protein, 3.5 % (3-acrylamidopropyl)-trimethylammonium chloride, 3.5 % acrylic acid, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 100
    pH 6.0
    Pressure ambient
    Temperature 298
    IDs solution ID:4 condition ID:1
    Sample Contents 9.3 mM Bis-Tris, 15.8 mM MES, 100 mM sodium chloride, 1 mM DTT, 5 % D-99% D2O, 400 uM [U-100% 13C; U-100% 15N] Protein, 3.5 % (3-acrylamidopropyl)-trimethylammonium chloride, 3.5 % acrylamide, 95% H2O/5% D2O
    Solvent System 95% H2O/5% D2O
    Ionic Strength 100
    pH 6.0
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
    Details Simulated annealing with RDCs
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:3 conditons ID:1
    Type 3D HNCO IPAP
    IDs experiment ID:11 solution ID:4 conditons ID:1
    Type 3D HNCO IPAP
    IDs experiment ID:12 solution ID:4 conditons ID:1
    Type 3D HNCO IPAP
    IDs experiment ID:13 solution ID:4 conditons ID:1
    Type 3D HNCO IPAP
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:8 solution ID:2 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:9 solution ID:2 conditons ID:1
    Type 2D 1H-15N HSQC
     
  •   Software and Computing Hide
    NMR Software
    Authors Guntert, Mumenthaler and Wuthrich
    Classification chemical shift assignment
    Software Name CYANA 2.1
    Authors Goddard
    Classification peak picking
    Software Name SPARKY
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name XPLOR-NIH 2.27
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name XPLOR-NIH 2.27