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SOLUTION NMR
Materials and Methods page
2L9E
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Varian
    Model Unity
    Field Strength 500.0
    Manufacturer Bruker
    Model DRX
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength unknown
    pH 6.2
    Pressure ambient
    Temperature 275
    IDs solution ID:1 condition ID:2
    Sample Contents 1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength unknown
    pH 6.2
    Pressure ambient
    Temperature 295
    IDs solution ID:2 condition ID:1
    Sample Contents 1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 100% D2O
    Solvent System 100% D2O
    Ionic Strength unknown
    pH 6.2
    Pressure ambient
    Temperature 275
    IDs solution ID:2 condition ID:2
    Sample Contents 1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 100% D2O
    Solvent System 100% D2O
    Ionic Strength unknown
    pH 6.2
    Pressure ambient
    Temperature 295
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method torsion angle dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 80
    Conformers Submitted Total Number 11
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:2
    Type 2D 1H-1H TOCSY
    IDs experiment ID:3 solution ID:2 conditons ID:2
    Type 2D 1H-1H COSY
    IDs experiment ID:4 solution ID:2 conditons ID:2
    Type 2D DQF-COSY
    IDs experiment ID:5 solution ID:2 conditons ID:2
    Type 2D 1H-1H NOESY
    IDs experiment ID:6 solution ID:2 conditons ID:2
    Type 2D 1H-1H TOCSY
    IDs experiment ID:7 solution ID:2 conditons ID:2
    Type 2D 1H-13C HSQC
    IDs experiment ID:8 solution ID:2 conditons ID:2
    Type 2D 1H-31P HETCOR
    IDs experiment ID:9 solution ID:1 conditons ID:2
    Type 2D 1H-1H NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNS
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification structure solution
    Software Name CNS
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification geometry optimization
    Software Name CNS
    Authors Goddard
    Classification peak picking
    Software Name SPARKY
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY
    Authors Goddard
    Classification data analysis
    Software Name SPARKY
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Bruker Biospin
    Classification processing
    Software Name xwinnmr
    Authors Bruker Biospin
    Classification collection
    Software Name xwinnmr