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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2KXA
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Bruker
    Model Avance
    Field Strength 600.0
    Manufacturer Bruker
    Model Avance
    Field Strength 750.0
    Manufacturer Bruker
    Model Avance
    Field Strength 900.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 7 % D2O, 25 mM [U-99% 2H] TRIS, mM [U-99% 2H] DPC, 93% H2O/7% D2O
    Solvent System 93% H2O/7% D2O
    Ionic Strength 20mM Tris
    pH 7.4
    Pressure ambient
    Temperature 305
    IDs solution ID:2 condition ID:1
    Sample Contents 25 mM [U-99% 2H] TRIS, mM [U-99% 2H] DPC-5, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20mM Tris
    pH 7.4
    Pressure ambient
    Temperature 305
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 60
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:2
    Type 3D HN(CO)CA
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:2 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCA
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D HN(CO)CA
    IDs experiment ID:7 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:8 solution ID:1 conditons ID:2
    Type 2D 1H-15N HSQC
    IDs experiment ID:9 solution ID:1 conditons ID:2
    Type 2D 1H-13C HSQC
     
  •   Software and Computing Hide
    NMR Software
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH 2.24
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY 3.113
    Authors Goddard
    Classification data analysis
    Software Name SPARKY 3.113
    Authors Goddard
    Classification peak picking
    Software Name SPARKY 3.113
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification data analysis
    Software Name NMRPipe 5.0
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification peak picking
    Software Name NMRPipe 5.0
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe 5.0
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification data analysis
    Software Name NMRDraw 5.0
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification peak picking
    Software Name NMRDraw 5.0
    Authors Palmer
    Classification data analysis
    Software Name ModelFree 4.2
    Authors Bhattacharya and Montelione
    Classification data analysis
    Software Name PSVS 1.4
    Authors Cornilescu, Delaglio and Bax
    Classification data analysis
    Software Name TALOS 1.2009.0721.18
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH 2.24