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SOLUTION NMR
Materials and Methods page
2KRP
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    closest to the average  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Bruker
    Model DMX
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1 mM RNA (5'-R(*CP*UP*CP*GP*GP*CP*UP*AP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')-1, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:1
    Sample Contents 1 mM RNA (5'-R(*CP*UP*CP*GP*GP*CP*UP*AP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')-2, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 20
    pH 6.8
    Pressure ambient
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:2 conditons ID:1
    Type 2D DQF-COSY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:3 solution ID:2 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 2D 1H-1H COSY
    IDs experiment ID:5 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 2D 1H-1H TOCSY
    IDs experiment ID:7 solution ID:2 conditons ID:1
    Type 2D 31P-1H HETCOR
     
  •   Software and Computing Hide
    NMR Software
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNS 1.21
    Authors Bruker Biospin
    Classification collection
    Software Name xwinnmr
    Authors Bruker Biospin
    Classification collection
    Software Name TOPSPIN
    Authors Varian
    Classification collection
    Software Name VNMRJ
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification data analysis
    Software Name NMRDraw
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe
    Authors Koradi, Billeter and Wuthrich
    Classification data analysis
    Software Name Molmol 2.6
    Authors Goddard
    Classification peak picking
    Software Name SPARKY
    Authors Goddard
    Classification data analysis
    Software Name SPARKY
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification structure solution
    Software Name CNS 1.21