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SOLUTION NMR
Materials and Methods page
2KE8
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 400.0
    Manufacturer Bruker
    Model AV-2
    Field Strength 700.0
    Manufacturer Bruker
    Model Avance
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.3-0.5 mM DNA (34-MER)-1, 120 mM sodium perchlorate-2, 0.9-1.5 mM SILVER ION-3, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.12
    pH 7.2
    Pressure ambient
    Temperature 298
    IDs solution ID:1 condition ID:2
    Sample Contents 0.3-0.5 mM DNA (34-MER)-1, 120 mM sodium perchlorate-2, 0.9-1.5 mM SILVER ION-3, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.12
    pH 7.2
    Pressure ambient
    Temperature 278
    IDs solution ID:2 condition ID:1
    Sample Contents 0.3-0.5 mM DNA (34-MER)-4, 120 mM sodium perchlorate-5, 0.9-1.5 mM SILVER ION-6, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.12
    pH 7.2
    Pressure ambient
    Temperature 298
    IDs solution ID:2 condition ID:2
    Sample Contents 0.3-0.5 mM DNA (34-MER)-4, 120 mM sodium perchlorate-5, 0.9-1.5 mM SILVER ION-6, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.12
    pH 7.2
    Pressure ambient
    Temperature 278
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method torsion angle dynamics
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 200
    Conformers Submitted Total Number 20
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-1H NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-1H TOCSY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 1D 31P
    IDs experiment ID:6 solution ID:2 conditons ID:2
    Type 2D 1H-1H NOESY
     
  •   Software and Computing Hide
    NMR Software
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification refinement
    Software Name X-PLOR_NIH 2.15
    Authors Schwieters, Kuszewski, Tjandra and Clore
    Classification structure solution
    Software Name X-PLOR_NIH 2.15
    Authors Guntert, Braun and Wuthrich
    Classification structure solution
    Software Name DYANA 1.5
    Authors Goddard
    Classification peak picking
    Software Name SPARKY 3.1
    Authors Goddard
    Classification data analysis
    Software Name SPARKY 3.1
    Authors Goddard
    Classification chemical shift assignment
    Software Name SPARKY 3.1
    Authors Bruker Biospin
    Classification processing
    Software Name TOPSPIN 1.3, 2.0, 2.1