POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2K18
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 600.0
    Manufacturer Bruker
    Model DRX
    Field Strength 800.0
    Manufacturer Varian
    Model Unity Inova
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 2 mM [U-99% 13C; U-99% 15N] hPDI-bb, 25 mM sodium phosphate, 70 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.1
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 303
    IDs solution ID:2 condition ID:1
    Sample Contents 2 mM hPDI-bb, 25 mM sodium phosphate, 70 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 100% D2O
    Solvent System 100% D2O
    Ionic Strength 0.1
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 303
    IDs solution ID:3 condition ID:1
    Sample Contents 0.5 mM [U-99% 15N] hPDI-bb, 25 mM sodium phosphate, 70 mM sodium chloride, 0.5 mM EDTA, 5 mM DTT, 12 mg/mL Pf1 phages, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.1
    pH 7.0
    Pressure 1
    Pressure Units atm
    Temperature 303
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
    Details structure was refined by using standard protocol in CNS with restraints from NOE distances, backbone torsions, hydrogen bonds and residual dipolar couplings
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy and the least restraint violations
    Conformers Calculated Total Number 200
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:2 solution ID:2 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:4 solution ID:2 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:5 solution ID:3 conditons ID:1
    Type IPAP-HSQC
     
  •   Additional NMR Experimental Information Hide
    Details
    Detail Structure was determined using multi-dimentional NMR spectroscopy
     
  •   Software and Computing Hide
    NMR Software
    Authors Cornilescu, Delaglio and Bax
    Classification data analysis
    Software Name TALOS
    Authors Linge, O'Donoghue and Nilges
    Classification data analysis
    Software Name ARIA 1.1
    Authors Brunger, Adams, Clore, Gros, Nilges and Read
    Classification refinement
    Software Name CNS 1.1
    Authors Bartels et al.
    Classification data analysis
    Software Name XEASY 1.3.13
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
    Classification processing
    Software Name NMRPipe 2.0