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An Information Portal to 105097 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2JW5
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Varian
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 10 uM DSS, 25 mM TRIS, 75 mM sodium chloride, 1 mM [U-2H] DTT, 0.2 mM EDTA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.075
    pH 7.5
    Pressure ambient
    Temperature 283
    IDs solution ID:2 condition ID:1
    Sample Contents 10 uM DSS, 25 mM TRIS, 75 mM sodium chloride, 1 mM [U-2H] DTT, 0.2 mM EDTA, 90% H2O/10% D2O
    Solvent System 90% H2O/10% D2O
    Ionic Strength 0.075
    pH 7.5
    Pressure ambient
    Temperature 283
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method simulated annealing
    Details Initial structures calculated with CYANA, no RDCs. Final 24 structures (12 submitted) calculated with XPLOR-NIH and RDC restraints
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 24
    Conformers Submitted Total Number 12
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:10 solution ID:1 conditons ID:1
    Type 3D HNHA
    IDs experiment ID:11 solution ID:1 conditons ID:1
    Type 3D 1H-15N NOESY
    IDs experiment ID:12 solution ID:1 conditons ID:1
    Type 3D 1H-13C NOESY
    IDs experiment ID:13 solution ID:2 conditons ID:1
    Type 2D 1H-15N HSQC
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 2D 1H-13C HSQC
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 3D CBCA(CO)NH
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 3D C(CO)NH
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 3D HNCO
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 3D HNCACB
    IDs experiment ID:8 solution ID:1 conditons ID:1
    Type 3D H(CCO)NH
    IDs experiment ID:9 solution ID:1 conditons ID:1
    Type 3D HCCH-TOCSY
     
  •   Software and Computing Hide
    NMR Software
    Authors Laskowski, R.A. et al.
    Classification data analysis
    Software Name ProcheckNMR
    Authors Schwieters, C.D. et al.
    Classification refinement
    Software Name X-PLOR_NIH
    Authors Guntert, P. et al.
    Classification structure solution
    Software Name CYANA
    Authors Cornilescu, G. et al.
    Classification data analysis
    Software Name TALOS
    Authors Varian
    Classification collection
    Software Name VNMRJ
    Authors Johnson, B.A. et al.
    Classification peak picking
    Software Name NMRView
    Authors Johnson, B.A. et al.
    Classification chemical shift assignment
    Software Name NMRView
    Authors Delaglio, F. et al.
    Classification processing
    Software Name NMRPipe