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An Information Portal to 105025 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
2JSM
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    n/a  
     
    Spectrometer Info
    Field Strength 800.0
    Manufacturer BRUKER
    Model AVANCE
    Field Strength 600.0
    Manufacturer VARIAN
    Model INOVA
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.5-5.0 MM HUMAN TELOMERE DNA, 90% H2O/10% D2O
    Ionic Strength 70
    pH 7.0
    Pressure 1
    Pressure Units ATM
    Temperature 298
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method TORSION ANGLE DYNAMICS
    Details AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (0.3+-0.48) VS (0.00+-0.00) MAXIMUM VIOLATION (0.21+-0.06) VS (0.00+-0.00) RMSD OF VIOLATIONS (0.03+-0.00) VS (0.03+-0.00) BOND LENGTHS (0.004+-0.000) VS (0.004+-0.000) BOND ANGLES (0.71+-0.01) VS (0.92+-0.01) IMPROPERS (0.38+-0.02) VS (0.36+-0.02) PAIRWISE RMSD: ALL ATOMS (0.61+-0.15) VS (0.82+-0.22) ALL ATOMS EXCEPT T6,T7,A8 (0.40+-0.11) VS (0.59+-0.15)
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria STRUCTURES WITH THE LOWEST ENERGY
    Conformers Calculated Total Number 50
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 1H-1H NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 1H-1H TOCSY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type 1H- 31P COSY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type 1H-1H COSY
    IDs experiment ID:5 solution ID:1 conditons ID:1
    Type 1H-15N JRHMQC
    IDs experiment ID:6 solution ID:1 conditons ID:1
    Type 1H-15N HMBC
     
  •   Software and Computing Hide
    NMR Software
    Classification structure solution
    Software Name X-PLOR 3.851
    Classification structure solution
    Software Name FELIX 2000
    Classification structure solution
    Software Name VNMR 6.0
    Authors BRUNGER
    Classification refinement
    Software Name X-PLOR 3.851